Database of gene expression in adult mouse brain and lung vascular and perivascular cells

Other scRNAseq databases from Betsholtzlab [link]

We provide this database resource free to the scientific community. We encourage reproduction of data excerpts from the database in academic publications on the condition that it is cited with reference to the original publications (below) and the database website
1. Vanlandewijck, M., He, L. et al. A molecular atlas of cell types and zonation in the brain vasculature. Nature, 554, 475-480 (2018).
2. He, L., Vanlandewijck, M. et al. Data Descriptor: Single cell RNAseq of mouse brain and lung vascular and vessel-associated cell types. Scientific Data, Volume 5, Article number: 180160 (2018)

(1) Search gene expression in vascular single cells

Search with mouse gene symbol to display its expression profile

(2) Identify enriched genes in brain cell type(s)

Choose two cell types/groups and identify the genes enriched in type/group 1

(refresh the web browser to reset all values if needed)

Type/Group 1 Type/Group 2

Type/group 1 expression threshold: