Single-cell RNAseq databases from Betsholtzlab

We provide these database resources freely for academic and other non-commercial purposes. We encourage reproduction of data excerpts from the database in academic publications on the condition that it is cited with the respective references to the original publications and the database websites.

Latest review by Betsholtz C on single-cell RNAseq

Review: https://ujms.net/index.php/ujms/article/view/9051

1. Single-cell analysis of adult mouse brain and lung vascular and perivascular cells

Database link: https://betsholtzlab.org/VascularSingleCells/database.html

Orignal publication 1: [Nature] https://pubmed.ncbi.nlm.nih.gov/29443965/

Orignal publication 2: [Sci Data] https://pubmed.ncbi.nlm.nih.gov/30129931

2. Single-Cell analysis of mouse Blood-Brain Barrier response to pericyte loss.

Database link: https://betsholtzlab.org/Publications/RetECscRNAseq/database.html

Orignal publication: [Circ Res] https://pubmed.ncbi.nlm.nih.gov/33375813/

3. Single-cell analysis of mouse fibroblasts and mural cells from multiple organs

Database link: https://betsholtzlab.org/Publications/FibroblastMural/database.html

Orignal publication: [Nat Commun] https://pubmed.ncbi.nlm.nih.gov/32769974/

4. Integrated single-cell analysis of mouse brain, lung and heart

• Brain database link: https://betsholtzlab.org/Publications/BrainIntegration/search.html
• Lung database link: https://betsholtzlab.org/Publications/LungIntegration/search.html
• Heart database link: https://betsholtzlab.org/Publications/HeartIntegration/search.html

Orignal publication: [Stem Cell Reports] https://pubmed.ncbi.nlm.nih.gov/35452595/

5. Single-cell analysis of mouse smooth muscle cells from multiple organs

Database link: https://betsholtzlab.org/Publications/SMC/database.html

Orignal publication: [Dev Cell] https://pubmed.ncbi.nlm.nih.gov/36283392/

6. Single-cell analysis of mouse brain meningeal fibroblasts

• Adult leptomeningeal droplet scRNAseq data: https://betsholtzlab.org/Publications/BrainFB/meninges/database.html
• Adult dural droplet scRNAseq data: https://betsholtzlab.org/Publications/BrainFB/dural/database.html
• Adult brain vascular fragment droplet scRNAseq data: https://betsholtzlab.org/Publications/BrainFB/VascularStubs/database.html
• Adult brain FACS-SmartSeq2 data: https://betsholtzlab.org/Publications/BrainFB/SS2/search.html
• Adolescent brain fibroblast droplet scRNAseq data: https://betsholtzlab.org/Publications/BrainFB/Adolescent/FB.html
• Embryonic brain fibroblast droplet scRNAseq data: https://betsholtzlab.org/Publications/BrainFB/Dev/search.html

Orignal publication: [Neuron] https://www.sciencedirect.com/science/article/pii/S0896627323006669

7. Single-cell analysis of kidney endothelial cells

Database link: https://betsholtzlab.org/Publications/MouseKidenyOB/database.html

Orignal publication: [ Int J Mol Sci] https://pubmed.ncbi.nlm.nih.gov/38673910/

8. Single-cell analysis of mouse pgWAT stromal vascular fraction

Database link: https://betsholtzlab.org/Publications/WATstromalVascular/database.html

Orignal publication: [Nat Commun] https://pubmed.ncbi.nlm.nih.gov/39223126/

9. Single-cell analysis of mouse liver

Database link: https://muhldatahub.org/Publications/LiverScRNAseq/database.html

Orignal publication: [EMBO Rep] https://pubmed.ncbi.nlm.nih.gov/40954217/